rs217709603 SNP Detail

Summary

• ID
  rs217709603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129997659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCATCTCG TTCTGGGGCA
  CTCACATTTA CACAAGAGCT GGAAGGAACC AGTTTGTCTG TTTTGTTCCC CCCTCCCCGC
  AAGCGTATTT TTTATTTCAT TCATATGAGT GTTTTGCTTG TGTGCCTGTG CACCACACGG
  ATGCAGTGCC GGTGGATGCC AGCAGAGGGC ACTGGATCCA GTCAATCCAG ATTTACAGAC
  Y
  GCTGTGAGCC ACTGTGTGGG TGCTGGGAAC TGAACCCAGC TCCTCTAGAA GAGCAGCGGC
  GCTCTTACCC GCGGGGTCAC CTCATCCCTC ACCCTTTCAT GTAAAGTGCG CTGCCCTCCC
  TTCTCCGCAG CTCTGCTTTC CTCAGAAGCT CAGCCTCTGG TCTCTGAGTC TTTTTGGAGA
  GGAGCTCTAG AAAATGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321317081	CHEV_4_129781110	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217709603					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129997659 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	1589 bp downstream
Rr600439	regulatory region 600439	1298 bp distal
Rr600440	regulatory region 600440	799 bp distal
Rr600441	regulatory region 600441	25 bp distal
Rr600442	regulatory region 600442	636 bp proximal
Tssr39229	transcription start site region 39229	1020 bp upstream