rs217687923 SNP Detail

Summary

• ID
  rs217687923
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126392052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAACGACC TCCTCCACTG
  AAGTGGCAGG ACTTCCTTGA GATGTTAAGG AGGGACAGGG TACCTACTGA AGATCTGCAC
  AGGGGCAACT AGAGACTCAG TCAGGAGGGA GTGTTGGTTT ACCGAGCATC AAACCCCAAA
  CCTATCGCTA ATTTCCACTA TCAGGGAAGG GATGCATTTG TGTGTGTGTG TGTGTGTGTG
  Y
  TGTAGGTTTC CTTACAGTTG CATAAAAGGA AGTGTGAGCA CTTTTAAATC AAATGAAAAT
  GATATCTTTA TAGATGATCT GCTGTTGAAA CATGGAGTAT GTCGGAAGAG CAGCTTAATT
  TAAATCTCTC CCCTCCCCCC AAGCCCAAAC CAGGCAGAGA GAAATCACCT TACCCCAGAA
  CCTGTTAAAG CACACCAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320946588	CHEV_3_126301321	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217687923					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126392052 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Cpgi13785	CpG island 13785			349 bp distal
Gm17225	predicted gene 17225			within coordinates
Gm43011	predicted gene 43011			1626 bp upstream
Rr367547	regulatory region 367547			1939 bp downstream
Rr397994	regulatory region 397994			883 bp upstream
Rr584646	regulatory region 584646			979 bp distal
Rr584647	regulatory region 584647			1496 bp distal
Rr584648	regulatory region 584648			1384 bp distal
Rr584649	regulatory region 584649			within coordinates
Rr584650	regulatory region 584650			959 bp proximal
Tssr31568	transcription start site region 31568			1984 bp downstream
Tssr31569	transcription start site region 31569			1549 bp downstream
Tssr31570	transcription start site region 31570			1417 bp downstream
Tssr31571	transcription start site region 31571			1365 bp downstream
Tssr31572	transcription start site region 31572			1290 bp downstream
Tssr31573	transcription start site region 31573			1149 bp downstream
Tssr31574	transcription start site region 31574			990 bp downstream
Tssr31575	transcription start site region 31575			968 bp downstream