rs217600416 SNP Detail

Summary

• ID
  rs217600416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67514780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATATACAA GGCAGTGAAT GGTAAAGCTT
  GGTAAACTCC AAGACAATGT TATATTCTGT TAAAAAAATT ATCCCATCTC CTCACTTTTC
  AAGTGATTTG CTGGGTGGTC ACAATCTACT ATCTACTTGT AATACCACCT CATTTTCATT
  Y
  CCCTGAGTCC CAAGCCATAT GGAGGAAAGC TAGTGGGGAG GCAGTCTCAG GGCTGATACA
  TATAGGTAAT CATGTGTTGA CTACTTAGTT ACCTCATGGG ATTTTGTTAC GTACTGGGAG
  GAGTGGAAGT GCAGGCATCC AAGCCTGGTA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321812351	CHEV_6_67487790	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217600416					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67514780 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	1920 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631670	regulatory region 631670	1990 bp distal
Rr631671	regulatory region 631671	1720 bp distal
Rr631672	regulatory region 631672	1817 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	2000 bp upstream
Tssr61258	transcription start site region 61258	1994 bp upstream
Tssr61259	transcription start site region 61259	1926 bp upstream