rs217580988 SNP Detail

Summary

• ID
  rs217580988
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79105509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACTTCCT AAAAACCTTA
  GCTAGACTTC CTGAGAACTC CTGTAAGGCC CTTAGCATAA GACACAAACT GTAAGAACAC
  CCCAACACTC GCCAGGGAAC ATGGGCAGTG TAAACATGGG TCGTGCTATT TCCAGCTATG
  GAGTCTATTT TCCAGAAGGA AAGTGTTCCC TCAGTAGTAA AGATCTCTGT AGTCCTTGCC
  T
  GGGGATTTAG GAGAGTTGGC CTTCGACCTC AAAATAGCTC TGGTCCCATC TGGATTAAGA
  TGTCTGACAG CAGGCCCACA ATTTGAAGTT GGAAAGTCTG TTCCAAACCA GTTGTCCGTT
  CCTTAAGTCC TGAATGTTCC TTCGTTAAGT AGTCATCCCT TTGTCCTGAA AAAATAAGAT
  AACTTTATGT TCTATCTCAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323759328	CHEV_11_79028185	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217580988					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79105509 () rs orientation: forward

Symbol	Name	Function Class
Gm11200	predicted gene 11200	1440 bp downstream
Gm74268	predicted gene, 74268	within coordinates
Rr402771	regulatory region 402771	315 bp downstream
Rr452198	regulatory region 452198	within coordinates
Rr452199	regulatory region 452199	540 bp distal