rs217566100 SNP Detail

Summary

• ID
  rs217566100
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67512923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCAGAGG CAGGGATTCT
  GAAGGATCAG GCTGGGTAGG ACACTGCAGG CGACTCCTGC CGGGCTTTTC CCTCCAGCTC
  TTATAAGCTC CTGTACCTGT AGGACTGGTT AGCTAGTGAC TCACTCAATG GAATTTGGGT
  GGCGCTCCCT ATTCCCAGGT CCCGCGGAAG AAGCCGGCAG CCCTGAGCTG CCTGAGATAG
  R
  ATCAGGCAGG GGAGATTGCT CCTGCCATCT GCTGACCAAA ACCCCATAGA GGAAACCAGT
  ACTTACCTGG CCGCACCCCT CCTCATAGCT CAGAACCAGG GCGTCCCACC TTTCCTAGTG
  CACCTCAGGA GTTTCTCCAG AGGCCCAGCT CCCGACTCTC ACGTCCCTAC AATTCCAGAC
  CCCATAATCC CGTACCTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321812334	CHEV_6_67485933	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217566100					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67512923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	63 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631668	regulatory region 631668	1127 bp distal
Rr631669	regulatory region 631669	684 bp distal
Rr631670	regulatory region 631670	133 bp distal
Rr631671	regulatory region 631671	within coordinates
Rr631672	regulatory region 631672	19 bp proximal
Tacstd2	tumor-associated calcium signal transducer 2	143 bp upstream
Tssr1872	transcription start site region 1872	1158 bp upstream
Tssr61255	transcription start site region 61255	1194 bp upstream
Tssr61256	transcription start site region 61256	713 bp upstream
Tssr61257	transcription start site region 61257	242 bp upstream
Tssr61258	transcription start site region 61258	137 bp upstream
Tssr61259	transcription start site region 61259	69 bp upstream