rs217539722 SNP Detail

Summary

• ID
  rs217539722
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93700843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCTCCT CTCCACCAGC
  GGCTCCCCAG TATGATATGC TACCTGGTCT AATATTAACA GAGCTAAGCA ACTGTGAACT
  GAAGCCTTCA AAACTATGCA TGGAAATAAA TCTTCTGTCT TTCCAAAGTT GTTTGCCTCG
  AGATTCATAA CATTAATGGA TGTTAATACC TTGTCAGTGG ATGAGTGGGT GGGTGGGTGG
  R
  TGAGTGGATG CCCGAAGGCA CTTATCTGAG GTCTGGGCTT TAGGCTTCTC TGCTCTCTGG
  TTCCAAGGCA CATAGAGAGG GATCTTGGTT ATGTTTGATT AACATTTATT TATAGTATAG
  TATAGTATAT TGATTTTTAA ATTTTGTGTT TATTTTATTC ATTTTATGTA TGAGTGCTCT
  GCTGCATGTA CACCTGCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354865434	MGP_WTSI_2_93710655	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	A	A	G	G	G	G	A	G	A	G	G	A	G	G	G	G	G	G	G	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217539722					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	A	A	G	G	G	G	A	G	A	G	G	A	G	G	G	G	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354865434	MGP_WTSI_2_93710655	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93700843 () rs orientation: forward

Symbol	Name	Function Class
Accsl	1-aminocyclopropane-1-carboxylate synthase (inactive)-like	Intron
Gm75246	predicted gene, 75246	74 bp downstream
Rr561298	regulatory region 561298	1742 bp distal
Rr561299	regulatory region 561299	197 bp proximal
Rr561300	regulatory region 561300	293 bp proximal
Rr561301	regulatory region 561301	509 bp proximal
Tssr25303	transcription start site region 25303	1395 bp upstream
Tssr25304	transcription start site region 25304	1123 bp upstream