rs217534116 SNP Detail

Summary

• ID
  rs217534116
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83433460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCACCGA CCTGCCCGCC
  GCCTCCGGGG CGGAGCGCAC AAAGGGGCAA AGTTTCCCAG CCTGCCGCTG CCACCGCCGC
  CACCGCCACC GCCACGGCCC AAGGTGTGCG CCTCCGGGAG CGGGAGCGCC CAGCCCAGCC
  AAGCTCGCTG CGCGCGCGGA GTCCCCCCCC CCAACCCCCG CCCCAGCCCT GGCCGAGCAG
  R
  GGACGGCGCA GGAGGAAGGA AGCAGCGGCG GCGGCCGCGG CGGCGGCAGC AGCAGCAGGA
  GCAATGAAGG CGGCCGCGGG ACTCCCCGCC CCCCGCGCGC CGCGGCACGT GCTCGCCCGG
  GGACTCCCCC GCCCGGGAGG GCGCGCACGT GCGGTCCCGC CGAGGCTGGC CGCTAGGCCC
  GGGACCGCGC AAGAGCGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss369031905	MGP_WTSI_6_83406472	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs217534116					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369031905	MGP_WTSI_6_83406472	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83433460 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17604	CpG island 17604	within coordinates
D6UmiJ2	DNA segment, Chr 6, University of Michigan Jones 2	1210 bp proximal
Gm67132	predicted gene, 67132	733 bp downstream
Rr632869	regulatory region 632869	within coordinates
Rr632870	regulatory region 632870	526 bp proximal
Rr632871	regulatory region 632871	1092 bp proximal
Tet3	tet methylcytosine dioxygenase 3	Intron
Tssr61651	transcription start site region 61651	1006 bp upstream
Tssr61652	transcription start site region 61652	966 bp upstream
Tssr61653	transcription start site region 61653	86 bp upstream
Tssr61654	transcription start site region 61654	57 bp upstream
Tssr61655	transcription start site region 61655	34 bp upstream
Tssr61656	transcription start site region 61656	within coordinates
Tssr61657	transcription start site region 61657	53 bp downstream
Tssr61658	transcription start site region 61658	311 bp downstream
Tssr61659	transcription start site region 61659	334 bp downstream
Tssr61660	transcription start site region 61660	702 bp downstream
Tssr61661	transcription start site region 61661	1045 bp downstream