rs217518988 SNP Detail

Summary

• ID
  rs217518988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172339608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATGATGT TTTAGATGGT
  TTTCTAGTAG GGAAATACGG TATGGCTCAG TGTGTGATAG AAACAAGATG GTGGTGATAT
  TCGAGATTAT ATTTTACTTC ACCCGATGCT CGGGACTCTG TGTTTTGGGT TTGCCCTTTC
  ATTATTTCAA AATGTAACCT TTGAACAGGT GAGGAACCTG CTGGGTCTTT TGGGGTGTCC
  R
  GGTGTGGTAT CTGCAATTAA CAAGAGAAAT GATCTCTGCT TTCTTCCACT TTTCCTGTAA
  GAAGAGTGAG GAGTCAATTA TAAAACAGCA TGACTTGTGG TATAATAAGA GGGCTTAGGT
  CTTAGGGTGA TCTCCAGGAT GAGTGCCATG GCCCACCATC ATCACCATTA TCACCATCAT
  CACCATCACC ATTATCACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352407784	MGP_WTSI_1_174442172	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217518988					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352407784	MGP_WTSI_1_174442172	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172339608 () rs orientation: forward

Symbol	Name	Function Class
Gm37125	predicted gene, 37125	1208 bp upstream
Gm57108	predicted gene, 57108	1232 bp downstream
Gm70635	predicted gene, 70635	1032 bp upstream
Rr396590	regulatory region 396590	895 bp upstream
Rr396591	regulatory region 396591	1993 bp upstream
Rr423599	regulatory region 423599	999 bp distal
Rr423600	regulatory region 423600	641 bp distal
Rr423601	regulatory region 423601	631 bp proximal
Rr423602	regulatory region 423602	973 bp proximal
Rr423603	regulatory region 423603	1162 bp proximal
Rr423604	regulatory region 423604	1963 bp proximal
Tssr302	transcription start site region 302	1958 bp downstream
Tssr10235	transcription start site region 10235	1204 bp upstream
Tssr15228	transcription start site region 15228	1892 bp downstream