rs217517480 SNP Detail

Summary

• ID
  rs217517480
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141304214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCGCCGCT ACCTCACGTT
  CTATGCACTT ATGATTTATT ATTATTTTCT GAGACAAATC TCTGAATGTG GCCAAAACTG
  ATTGGGAATT CTATGAAGTC TAAGCAGGTC GCAAGCTTCT GGCAATTTCC CCCAGCACTG
  GGATCACAGA TTTGCACCAC CAAACCCCAG TAGTTTGTGC ATTTTAAGAT TGTAGCTGTG
  A
  CTGCCTTCAA ATGCAGAGAT CCATGTGTCT CTGCCTCCCA AGTACTGAGA TTAAAGGTGT
  TTGCCATTAG ACATGGCTAA ATTGTTTTTT TTTTTTTAAT GTATGTGTGT GTGCCTGAGT
  GTAAGCGTGT ACACCACATG CATTAAGGTT CCAAGGAGGC CAGCAGAGGG CGCCAGCTCT
  CCGGAAACTG GAGTTGCAGG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321388173	CHEV_4_141132818	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217517480					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141304214 () rs orientation: forward

Symbol	Name	Function Class
Fblim1	filamin binding LIM protein 1	mRNA-UTR
Gm68503	predicted gene, 68503	1729 bp upstream
Rr603812	regulatory region 603812	1740 bp distal
Rr603813	regulatory region 603813	1239 bp distal
Rr603814	regulatory region 603814	1310 bp distal
Rr603815	regulatory region 603815	156 bp proximal
Rr603816	regulatory region 603816	1585 bp proximal
Tssr44332	transcription start site region 44332	69 bp upstream