rs217496537 SNP Detail

Summary

• ID
  rs217496537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59837370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTC CTCCCTCCCT CCCTCCCTCC
  Y
  TCCCTCCCTC CCTCCCTCCC TCCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	FVB/NJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ
ss640432557	FVB_NJ_4_59850242	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	FVB/NJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ
rs217496537					SNP	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss640432557	FVB_NJ_4_59850242	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59837370 () rs orientation: forward

Symbol	Name	Function Class
Rr593157	regulatory region 593157	1744 bp distal
Rr593158	regulatory region 593158	710 bp distal
Rr593159	regulatory region 593159	367 bp proximal
Snx30	sorting nexin family member 30	Intron