rs217424691 SNP Detail

Summary

• ID
  rs217424691
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58434315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAACACTGG GAAAGGTGCT
  ATACTATGTT ATGGCTTGGG TATGTAAGTT TGAATAAACA AAAGATTCAA GTAGAAAAGA
  AGTGGGAAAG AAAAAAATCG TTGATAACAA TGTAAGAAGA AAGATAGCAT CATTAGGACG
  AATGTCTTAT TTTTGAGAAT TGGAAGTTAT GTCCTCCTGA GACACGGCAA AGCTTTTATA
  M
  TTCTGCCAGT CTAGGAATAT ACATTTTTAA GAGCCATGCT TATCCTGTTC AGATAGACTA
  TCATAATTTA TTCGCCAGAT AGTTATGAGG TGCTAGTTGC AATCTTCTAA ACACTGCCAG
  ATAGTTGAGA TTGTTTTCTT TTGTTTAGAT TATTTATTTA TTTATTTATG CGTCTGTATC
  TGAGCGTGTG CACAGGAGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358099876	MGP_WTSI_3_58330816	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217424691					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358099876	MGP_WTSI_3_58330816	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58434315 () rs orientation: forward

Symbol	Name	Function Class
6720482G16Rik	RIKEN cDNA 6720482G16 gene	36 bp upstream
Cpgi13201	CpG island 13201	622 bp distal
Eif2a	eukaryotic translation initiation factor 2A	Intron
Rr397681	regulatory region 397681	840 bp downstream
Rr577247	regulatory region 577247	1063 bp distal
Rr577248	regulatory region 577248	1287 bp distal
Rr577249	regulatory region 577249	512 bp distal
Serp1	stress-associated endoplasmic reticulum protein 1	1010 bp upstream
Tssr886	transcription start site region 886	1157 bp upstream
Tssr29207	transcription start site region 29207	1766 bp downstream
Tssr29208	transcription start site region 29208	1050 bp downstream
Tssr29209	transcription start site region 29209	884 bp downstream
Tssr29210	transcription start site region 29210	833 bp downstream
Tssr33349	transcription start site region 33349	1734 bp upstream
Tssr33350	transcription start site region 33350	1166 bp upstream
Tssr33351	transcription start site region 33351	1133 bp upstream
Tssr33352	transcription start site region 33352	1106 bp upstream
Tssr33353	transcription start site region 33353	1022 bp upstream
Tssr33354	transcription start site region 33354	997 bp upstream