rs217421712 SNP Detail

Summary

• ID
  rs217421712
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30490979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATCCTTC CCGGATTCTG
  CAGCAGTGGG CTGGCTAGGG TTGTAGGGTT GGGTGGGAGA CCCCGACCCA GCGGGGACAG
  AGGGTGGGCT GTTTGTGCTT GTTTGGGGCC CCAAGGGTTC AATATTTGCC GCTCCCCACC
  TCACCCCTGC TGCTGCCCCA AGTCCACGGA GGTGTGGGGT GTGGAGTGGC GGGGGGGGGG
  S
  GGGGGGGGAC TGCCAGCCTC TGGGATCTTC GAGGGAAGGC TCCGGGTCTA GAGAATCCTG
  GGATTCTATT CCAGGAAGGA GAGAGCAACT CCAGGGGAGA ATTATACTTG TAACAGAAAA
  GAAAGCTCTC TGCCTTCTAC AGTGCAGACA GAGCTCCGTT CCCACCCCCA CAAGGCCCCA
  GGGACCCGAA AGAATGTGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	CAST/EiJ	CE/J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ
ss353519340	MGP_WTSI_2_30456487	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	G	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	CAST/EiJ	CE/J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ
rs217421712					SNP	C	C	G	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353519340	MGP_WTSI_2_30456487	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30490979 () rs orientation: forward

Symbol	Name	Function Class
Cstad	CSA-conditional, T cell activation-dependent protein	Intron
D2Dcr46	DNA Segment, Chr 2, Derry C. Roopenian 46	1380 bp proximal
D2Mit33	DNA segment, Chr 2, Massachusetts Institute of Technology 33	1342 bp proximal
Rr554365	regulatory region 554365	1013 bp distal
Rr554366	regulatory region 554366	within coordinates