rs217389827 SNP Detail

Summary

• ID
  rs217389827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138112453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGACTTCT ATATCCTATG
  GCTGCGTGGG TATCCTATAG TCATGTGTCA TACAGGCCCT GAAACCCTTT AACAATCTCC
  CTTTTCCAAA ATTGCCATTT GATGATAACT GGAATGGTAG GTGGGGCTGG ACCCTCTTAG
  ACATAGGAGA CAGAAAGCCT AACTCATACT GATCTGGGAG GGGTAGGGTT GGGGGAATTG
  Y
  AACTTATTGT CTTAAGGACA GAGTACTCAG GACTTGAACG GGGTTGGTGA GAACCAGGTT
  TGCCAGGGGA CTTGGTATTG CTTCCTCAAT CTCCCCTCTT CTTAGCAAAG GCACTCCCTT
  CCACCCTCTC AACAACTCTA GCAGGAAGTG AGCATCTCTT TCCCCAACAG TTCCAACAAA
  AGTCCAGGGA CTAAGCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321372999	CHEV_4_137941057	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217389827					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138112453 () rs orientation: forward

Symbol	Name	Function Class
Rr602904	regulatory region 602904	961 bp distal