rs217385870 SNP Detail

Summary

• ID
  rs217385870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90399250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGGTGTAT CCCACCACTG CCCTCGAGTT TTATTTCTAA
  AGATTTGCTA TTTTTGTTAG AGAAAGTCCT GCCGTGTTAC CAAGGCTAGC CTTGAGCTCA
  Y
  AAGCTCTGTT TTTTTTTTTC CATTTTTTAT TAGGTATTTA GCTCATTTAC ATTTCCAATG
  CTATACCAAA AGTCCCCCAT AGCCACCCAC CCCCACTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320837898	CHEV_3_90295865	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217385870					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90399250 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13464	CpG island 13464	761 bp distal
Rr397812	regulatory region 397812	644 bp downstream
Rr580375	regulatory region 580375	420 bp distal
Rr580376	regulatory region 580376	884 bp distal
Rr580377	regulatory region 580377	772 bp distal
Rr580378	regulatory region 580378	448 bp distal
Rr580379	regulatory region 580379	1969 bp proximal
Snapin	SNAP-associated protein	930 bp upstream
Tssr34232	transcription start site region 34232	1176 bp upstream
Tssr34233	transcription start site region 34233	1153 bp upstream
Tssr34234	transcription start site region 34234	905 bp upstream