rs217360270 SNP Detail

Summary

• ID
  rs217360270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116025138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATCTCTA CCTGGAAATG
  TCACCATAGA CTCTGCCTCT CCTGAAAAGG GGTGTATGGG GCAGCAGTGT CAGGAGCTGG
  ACAAGTAGCT TTCTAGAACT TTTGGGTGCC TCGCTCACAA TAGTGTGATA TGATTCTTAC
  CTTGAAACTG TGTGTTTACT GGCACCCACA TCTGCTCGAG CTGCCACCCA TATGTTTACA
  Y
  ACAAAACTCA GTCACGGGGG GCTGGTGAGA TGGCTCAACA GGTAAGAGCA CCCGACTGCT
  CTTCCGAAGG TCCTGAGTTC AAATTCCGGC AACCACATGG TGGCTCACAA CCATCCATAA
  TGAGATCTGA CTCCCTCTTC TAGAGTGTCA GAAGACAGCT ACAGTGTACT TACATATAAT
  AAATAATAAA TAAATCTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277024	CHEV_4_115840546	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217360270					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116025138 () rs orientation: forward

Symbol	Name	Function Class
Rr597873	regulatory region 597873	1468 bp distal
Rr597874	regulatory region 597874	352 bp distal
Rr597875	regulatory region 597875	within coordinates
Rr597876	regulatory region 597876	230 bp distal
Rr597877	regulatory region 597877	828 bp proximal
Rr597878	regulatory region 597878	1275 bp proximal
Rr597879	regulatory region 597879	1731 bp proximal
Tspan1	tetraspanin 1	340 bp upstream
Tssr42870	transcription start site region 42870	362 bp upstream
Tssr42871	transcription start site region 42871	334 bp upstream