rs217319978 SNP Detail

Summary

• ID
  rs217319978
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132482747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATCTCCTC CAAGCAAGTT CTCCTCTGAT CTCCGCACAG
  TGTGTGTGTA GGCATGATAT ATATGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTATAT
  R
  TATATGATCA AGACTTTTAT TTTTTTCATT TTCAAATAAG TTTTAAAGAG ACAGTTTTCC
  AAGAACCTAA TGCCAAGTCT AGGGTCACTG AAAGTGCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss363301261	MGP_WTSI_4_132311351	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	A	G	A	A	G	A	A	A	G	G	A	A	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs217319978					SNP	G	G	G	G	G	G	G	G	G	A	G	A	A	G	A	A	A	G	G	A	A	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363301261	MGP_WTSI_4_132311351	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132482747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	1467 bp proximal
Rr601061	regulatory region 601061	881 bp distal
Rr601062	regulatory region 601062	682 bp distal
Rr601063	regulatory region 601063	1101 bp proximal
Rr601064	regulatory region 601064	1806 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	Intron
Tssr43702	transcription start site region 43702	1668 bp downstream
Tssr43703	transcription start site region 43703	1671 bp downstream
Tssr43704	transcription start site region 43704	1726 bp downstream
Tssr43705	transcription start site region 43705	1793 bp downstream
Tssr43706	transcription start site region 43706	1812 bp downstream