rs217315387 SNP Detail

Summary

• ID
  rs217315387
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27244470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTG GAAATGTTGA CTAAGGAGAA
  G
  GACAAGTTCA GGGCTAGCCT GGGCA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320688930	CHEV_3_27089243	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217315387					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27244470 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr374718	regulatory region 374718			within coordinates
Rr574359	regulatory region 574359			1545 bp distal
Rr574360	regulatory region 574360			117 bp distal
Rr574361	regulatory region 574361			462 bp proximal
Rr574362	regulatory region 574362			1540 bp proximal
Tssr28607	transcription start site region 28607			1912 bp downstream
Tssr28608	transcription start site region 28608			1880 bp downstream
Tssr28609	transcription start site region 28609			1863 bp downstream
Tssr28610	transcription start site region 28610			1811 bp upstream
Tssr32839	transcription start site region 32839			1609 bp downstream
Tssr32840	transcription start site region 32840			1653 bp downstream