rs217299521 SNP Detail

Summary

• ID
  rs217299521
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79103979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTTGGTG TGAGGCATGA
  CCACTTCAAG AAGTTTCATA GCTTCTGCCC AATCGCCAAC CTGGATAAAT TGTGGGTGCT
  GGTCAGTGAG CAGACATGGG TCAATGCTAC AAAACAAACA AACAAACAAG ACAGCAGCTG
  CTCCCGTATG TGGTGTCCAA TCAATCCGGC AACTTGTTCT AGGAAAGGGA AAGCTCCCTA
  R
  GCAGCTGTCA TCATGAAGGC CAAATTCCTC GGCAGAAGAG CTGAAGAGAA GATAAAGGAT
  GTTGGAGGTA CCTGTGCTCT GGTGGCTTGA AGCCACCCAG GGGGTTAATT AAATGCTAAT
  ATTAAAAAAA ATCTCTATGG GAACACATGT TGTAAATCGT CCTGGAATTT TTTACCTCAT
  CCAACTATTG GTTGCTGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323759311	CHEV_11_79026655	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217299521					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79103979 () rs orientation: forward

Symbol	Name	Function Class
Gm11200	predicted gene 11200	within coordinates
Gm74268	predicted gene, 74268	1440 bp downstream
Rr402771	regulatory region 402771	914 bp upstream
Rr452198	regulatory region 452198	575 bp proximal
Rr452199	regulatory region 452199	969 bp proximal