rs217275522 SNP Detail

Summary

• ID
  rs217275522
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101504628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTAGAGT CCGAGCTATG
  AGTGGCGGAG GCGGGATCAG TCCAATGGGG TGGAGTTCTG CATGGCGGAT TGGGATCCGT
  GCTGGCAGGG ACTGAGCTCA GCCAACTGGG GGCGGAGTCC GCGAAGTGGA GGAAGGCGTT
  GGGGGAGGGT CTCCATGAGC TGGAGGCAGG ATTATGTGCC AGAGTGGCGG AACTGTGGGC
  S
  GAGCGGAACC GGGCCCGGCA GAGGAGGAGC TCAGAGTGGC AGGGATCAGA ACCAGTATAG
  GAAATACTGA GTGCCTGTAG GGCAGAATCT GGCATAATTG GGTGTGAGGT TGTAATTGGC
  AGAATTCTAA ACCAGTAGGA ATCAGGTTCT GCATGGATGG TGGGATTGGG CTTCTGGGGG
  CGGGAAGCCA CGGGATGGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362620052	MGP_WTSI_4_101320036	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	G	C	C	G	G	C	C	G	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217275522					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	G	C	C	G	G	C	C	G	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362620052	MGP_WTSI_4_101320036	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101504628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14504	CpG island 14504	within coordinates
Leprot	leptin receptor overlapping transcript	294 bp upstream
Rr367655	regulatory region 367655	10 bp downstream
Rr398357	regulatory region 398357	120 bp upstream
Rr596187	regulatory region 596187	within coordinates
Rr596188	regulatory region 596188	82 bp distal
Rr596189	regulatory region 596189	266 bp proximal
Rr596190	regulatory region 596190	373 bp proximal
Tssr38009	transcription start site region 38009	245 bp upstream
Tssr38010	transcription start site region 38010	281 bp upstream
Tssr38011	transcription start site region 38011	311 bp upstream
Tssr38012	transcription start site region 38012	332 bp upstream