rs217274637 SNP Detail

Summary

• ID
  rs217274637
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132781389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGTGCAG ACAATGGGGC
  CAGCTACTAG GCAGGAAACT GGAGTGGCAA GGTAGGCCAT GGTTATTAAA GAAACCAGAC
  GGGGTGGTGG TGCACACTTC AAAGCCTAGC TCTAGGAAGA CAGAGGCAGG TGGATCTCTA
  GGCTAGCCTG GTCTGCAGAA TGAGTTCCAG AACAGTTAGG GGGACCTAAA CAAACCCTGT
  M
  TCTAAAAACA AGAGCTATAT CCAGTTGCTG CTGGCATTGG GCAGGTGCCA GCTCCACATA
  CACCTCCATG GCAGTGGGCA CACCTTCCTC TTCCTCTAGG GACAGCGACT CAGACTTGTA
  CAGTTACCAG CCCCAGAGCT GTCTCTCTGC TTCATAAGAT GTCACTCCTC ATTTTTAGGG
  GTGAGAAAAT GGGGAAGAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321338389	CHEV_4_132609993	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217274637					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132781389 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahdc1	AT hook, DNA binding motif, containing 1			Intron
				Noncoding-Transcript-Variant
Rr377217	regulatory region 377217			within coordinates
Rr601173	regulatory region 601173			984 bp proximal
Tssr39445	transcription start site region 39445			1022 bp upstream