rs217265415 SNP Detail

Summary

• ID
  rs217265415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135665413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGAGAC CCAATCCCGG
  GATGAAGTCT CTAAGGACCC TGCCTGCTTG GAGCCCACCC GTTGCTGGCC GTGCAGAATG
  ACAAGCTAGC TCCAGGAGAC ACTTGCCAGC CTTTCGCCTT TCCTACATGG CTCCCTGCAC
  CCTCCTAAGG TTTAGCATGT TCTGGTTTTG TTTTTCATTT TTTTATTGCT GGGGATAGAC
  Y
  TCAGGGCCTA GGCATGCTCA GGCAAACATT CCACCACTGA ACTACAGCCT CAGCTCTTGT
  TTTTTAAGCT GAGTTCTCTA TGTAACTCAG GCTAATCTCA GCCTGTGGCT CTCCTGTGTT
  GTATTAAGTA TTTAATCTCA ATTGGGGGTT TCTACCCCAC TTTTGATCAT TCAGTTCCCA
  GATAAAAGAC AGAAAACTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321353520	CHEV_4_135494017	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217265415					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135665413 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fuca1	fucosidase, alpha-L- 1, tissue			Intron
				Noncoding-Transcript-Variant
Rr602205	regulatory region 602205			1013 bp proximal
Rr602206	regulatory region 602206			1047 bp proximal