rs217261865 SNP Detail

Summary

• ID
  rs217261865
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119455131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGCCTCG GTATGTGCAA
  TGTGAGATAC AAAGGGCCTG CAGGAATTTT AGCCACTGCA TTTCCTGATT AAGACCCACG
  GGGTGGGATT TACTGTGTAT TGTGCCTGTT AGTTCTGTAC ACACTCGGGT CTAACAAGTA
  TCTGTTACTT AGGAAAGAGG AGTGGCTAAA AGCCAAGGCG ATCGTATTCC AAATTTGGAC
  Y
  ACATCCCAAA TCTTGTTCAG TGCAAGATGT CAGCAGGTAA GGTCATTGCT ACCAAGTCTC
  ATGATCCGAG TTCCATCCTG GAATCCACAT GCTAGGAGAG GGATGACTTC TTCAAGTCGT
  CTTCTGACCA CTAGATACTG GCTGTGGAGC ATGCCCTCTC CCCATTAAAG AAATACAATG
  TATTAATAAT AATAATGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321928123	CHEV_6_119428188	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217261865					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119455131 () rs orientation: forward

Symbol	Name	Function Class
Fbxl14	F-box and leucine-rich repeat protein 14	1498 bp upstream
Rr637690	regulatory region 637690	within coordinates
Rr637691	regulatory region 637691	1008 bp proximal
Tssr58502	transcription start site region 58502	1310 bp upstream
Tssr58503	transcription start site region 58503	1334 bp upstream
Tssr58504	transcription start site region 58504	1361 bp upstream
Tssr58505	transcription start site region 58505	1575 bp upstream
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron