rs217239866 SNP Detail

Summary

• ID
  rs217239866
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29694118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGAGGAC GTGGGTGTGG
  GATGCAGGAA ACATTCCTTT TCCTCATTCT TTTTCCCTTA AGCAGCTGCA GCCTGCAGGC
  TTTCCGTCTA GGCGGGCAGA AGCAGAACCA CTGACCCTTT AGCAAGTTGT CCCTCACAGA
  ACAGGTGTCT CCCCCGCCTC TCGGAGGAGA GGGATGGCTG GCTGCTTAGT GACATGGGCC
  R
  CCGACCAATG AGAAGTCAGC CTCGGGCAGC CTCACCAATG GCCGTCCGGG GGGCGGGCCC
  GGTTTCCTGA GAGCCGGGCG GGCCAAGCTG GTCTGCGGCC GCGGTGGAGT CTCCGCTGCT
  CACGCTGCCC GCCGCGGCTT CAGCGGCGGC GCCGTTCCCT GGCCGCGCGG CTCCCCGACG
  CACGGTTCGG GCGGCTCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367818912	MGP_WTSI_6_29644119	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217239866					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367818912	MGP_WTSI_6_29644119	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29694118 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17240	CpG island 17240	within coordinates
Rr627610	regulatory region 627610	within coordinates
Rr627611	regulatory region 627611	158 bp proximal
Rr627612	regulatory region 627612	567 bp proximal
Rr627613	regulatory region 627613	615 bp proximal
Tspan33	tetraspanin 33	103 bp upstream
Tssr1798	transcription start site region 1798	132 bp upstream
Tssr55283	transcription start site region 55283	63 bp upstream
Tssr55284	transcription start site region 55284	85 bp upstream
Tssr55285	transcription start site region 55285	136 bp upstream