About   Help   FAQ
rs217215056 SNP Detail
Summary
  • ID
    rs217215056
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:45111062 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCGGTGGCC TCCTCCCTCC
    CTCCCTCCCT CCCTCCCTCC CTCCCTCCCT CCCTCCCTCC CTCCCTCCCT CCCTCCATCT
    TGTCCTTTCA GAATCTGCAG GATCTCTGGA ATTCCAGGCT CCTGTCCCCA GGGCTGAAGA
    CAGCTCTGCA GCTGCGGTGT GTACTCTTTA TGGAGCGGGT CCCTGATTGG AGCCTCAGGG
    R
    TACCAGGTGG GCCTGGCGCC TGTGCTTGGG ATGGCAGCTG GGCGGACAAG GGACCATACA
    ATCCAAAGTG GACCTGAGGT TTATTGGCGC CTCCCCAGGC CACCATTCCC ACCCCTCCCA
    ATAATTACAA AAGTAAGAAA AATGCCTTTC CCCTTCCCCC ATTCATCCCA GGAAAATGTC
    ATAATTTATG AAGAAAAGAC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371177662 MGP_WTSI_7_52717008 EVA_MGPV3 EVA_MGPV3 f SNP G A A A A A A A A A A A A A A A A A A G A A G A A A G G A A A A G A A A A G A G A A A A A G A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217215056 SNP G A A A A A A A A A A A A A A A A A A G A A G A A A G G A A A A G A A A A G A G A A A A A G A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss371177662 MGP_WTSI_7_52717008 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:45111062 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Bax BCL2-associated X protein 59 bp downstream
Cpgi19061 CpG island 19061 1504 bp distal
Ftl1 ferritin light polypeptide 1 1754 bp upstream
Gm10252 predicted gene 10252 1338 bp downstream
Gm73429 predicted gene, 73429 175 bp upstream
Gm73431 predicted gene, 73431 within coordinates
Rr380754 regulatory region 380754 206 bp downstream
Rr646450 regulatory region 646450 1264 bp distal
Rr646451 regulatory region 646451 1529 bp distal
Rr646452 regulatory region 646452 619 bp distal
Rr646453 regulatory region 646453 186 bp distal
Rr646454 regulatory region 646454 within coordinates
Rr646455 regulatory region 646455 1401 bp proximal
Tssr66541 transcription start site region 66541 1950 bp downstream
Tssr66542 transcription start site region 66542 538 bp downstream
Tssr72397 transcription start site region 72397 1907 bp upstream
Tssr72398 transcription start site region 72398 1757 bp upstream
Tssr72399 transcription start site region 72399 692 bp upstream
Tssr72400 transcription start site region 72400 661 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory