rs217211655 SNP Detail

Summary

• ID
  rs217211655
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117148282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGATAGGG TGAGTGGGAG GAGGGAAAAC
  TGCAGGTGGT AGAAGTGAAG CCCCCCACCT CCAGGCCTGC ACCAGAGGGC CACAAGGGAG
  CCCAGAACTC TGCCACCCCA CTTCTCCTGG GTCCTTTTGT CCTTTAGAGG CTGAGCCCAG
  C
  CAGATCTCAC TGTGATCCCT GGCCGAGGGG ATGGTCTTTG CAAGAAACTT TCTGTAACCA
  TTCCTGCTGA TGTTCCTGAG TCTTCCCCAC AAGAGCCACC AAACCCCCTG CACCAGGCAG
  ATAATGACTG GCCCCACTTT TCTCTCTACA                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321921050	CHEV_6_117121339	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217211655					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117148282 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17888	CpG island 17888	1780 bp distal
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637287	regulatory region 637287	698 bp distal
Rr637288	regulatory region 637288	1110 bp proximal
Tssr58391	transcription start site region 58391	1316 bp downstream
Tssr58392	transcription start site region 58392	155 bp upstream
Tssr58393	transcription start site region 58393	167 bp upstream
Tssr58394	transcription start site region 58394	187 bp upstream