rs217192586 SNP Detail

Summary

• ID
  rs217192586
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:109246519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCTTTTT CCTTATCATC
  TTTCCTCTTT TCCAGCGCCA CTTCTTCTTA TGCAGGACCA CATTTTAAAT GGCAAGTCAT
  GTGTGTTTTG TTTGTAAAGA TCTATAATGA GTAACATGGC TTACAGTACT TGCCTCTTTT
  TGATGGTTTT GCATTCTGAG TTTTTAGGAA AGTGGTAGTC AACAGCCAAC CCCCCCCCCC
  M
  AAAAAAAATC ACATGGAAAA TTCCAGAAAG AAAAAGTATA TATATTTTAT ACATTCTTTC
  ACGATTTATG ATTATAATGT TCTATTTTAT TGCAACACTG CTGTTGATAA TCTTCGTGCC
  TAGGATGCAC TTTACAGTTT CGGTGATACA GTATTGCTAA GGATTGATCC TCCTGTAGTT
  TCAGGCTTTC AAACCTATTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320868526	CHEV_3_109142121	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217192586					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109246519 () rs orientation: forward

Symbol	Name	Function Class
Rr583407	regulatory region 583407	960 bp proximal
Tssr31282	transcription start site region 31282	1136 bp upstream
Tssr31283	transcription start site region 31283	1261 bp upstream
Tssr31284	transcription start site region 31284	1424 bp upstream
Tssr31285	transcription start site region 31285	1459 bp upstream
Tssr31286	transcription start site region 31286	1468 bp upstream
Tssr31287	transcription start site region 31287	1500 bp upstream
Tssr31288	transcription start site region 31288	1528 bp upstream
Tssr31289	transcription start site region 31289	1551 bp upstream
Tssr31290	transcription start site region 31290	1590 bp upstream
Vav3	vav guanine nucleotide exchange factor 3	1450 bp upstream