rs217186197 SNP Detail

Summary

• ID
  rs217186197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:24559515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATAAAATG CTTGCCTTCC
  ATCTCCAGCT CCTGAATTCA ATGCCCAGAC ACCACGTAAG AGAAGCTGTC CTTGCTCAAA
  GTTCCAGCTC TGGTGAAGTA GAGACAAGCA GATCTCTAGG GTTTTCTGGG CAGCGAGCCT
  TGCATATTTC ACAAGTTCCA GGACAGTGAG AAGCCCTGTG TTACAATAAA ACAATGACAT
  Y
  TGAGGAATGG CACTCAGGGT TGTCCTGTGG TCACTACATA CTTTTAACCC TCCCAGGGCG
  AATGCACTAA GAATCTATGA TGGGGATGGG GGAGGTGGAG GTACAGGCTA TGACATGTTT
  CTTACCATAA CCCTAACCAT TTGAACTTAA CAGTTATCTG CAAAAGTTTC ATTTACAAAG
  GAATCCATGC TGGCACAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324295909	CHEV_13_24467401	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217186197					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24559515 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	Intron
Gm11342	predicted gene 11342	within coordinates
Rr476038	regulatory region 476038	471 bp distal
Rr476039	regulatory region 476039	within coordinates
Rr476040	regulatory region 476040	408 bp proximal
Tssr4016	transcription start site region 4016	518 bp upstream
Tssr118892	transcription start site region 118892	502 bp upstream
Tssr118893	transcription start site region 118893	538 bp upstream
Tssr118894	transcription start site region 118894	602 bp upstream
Tssr118895	transcription start site region 118895	636 bp upstream
Tssr121784	transcription start site region 121784	410 bp downstream
Tssr121785	transcription start site region 121785	430 bp downstream
Tssr121786	transcription start site region 121786	490 bp downstream