rs217160221 SNP Detail

Summary

• ID
  rs217160221
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119823371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGATAAA GGGGGTGCCC
  TGTTCTTGAG TCCTGGCTTC TGTAGGCTTC TGTAGTATAC ACATACACAC ACACACATAC
  ACACACACAC ACACACACAC ACACATATAT ATATATATAT ATATATATAT ATATATATAT
  ATACTTAAAT ATATTATTTC AAATATTTTT AAAATTTTAA ATTTATTTTT CAAATTTAAA
  W
  TTTATTTTTA ATTTTTAATA TATATATTAT ATATTTATTT ATATTTAAAT ATATTATATA
  TTATATGTTA ATGTCTATAT GAATATTTTT CATGTATGTA GGTCACACAT GCTGGGCGTG
  GTGGCACATG ACTTTAATCC CAGCACTCGG GAGGCAGAGG CAGACAGATT TCTGAGTTCG
  AGCCAGCCTG GTCTACAAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
ss355439739	MGP_WTSI_2_119818626	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	T	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
rs217160221					SNP	A	A	A	T	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355439739	MGP_WTSI_2_119818626	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119823371 () rs orientation: forward

Symbol	Name	Function Class
Mapkbp1	mitogen-activated protein kinase binding protein 1	Intron
Rr563617	regulatory region 563617	143 bp distal