rs217114479 SNP Detail

Summary

• ID
  rs217114479
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89157599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCAGGTT AGATCAAAGA
  GCAGCCAGCC CACAGCCTCA GCCAAGTCTT GATGGAAATG AGGCTGTGGC CCCAGACCCT
  GCTTTGTGCT GTCATGAGAA GCAGCTCTCT GTCCAGGGTG CTTGTCCTTT AGAGCAGCAA
  GGTTCCCGCC CCCTCCCCCC CCCACCTCCC TCTCCCGGTG GATGCTCCAA ACTTTAGGAA
  M
  CACCCATTTT GGTCACTTTT GTATACTCAG TAGTGCCTGA GAGTGGGAAG TAGGTTGGTT
  GAATGAAAAA ACTTATCCTT CAACCCTTCT AGGACAAAAT CCTACACATT TAGAGGCACC
  TAAAGGTTAG GGAATAAGGC TCAGTAAAGA TGAAGCCAAG CGTCTAAGGA GGTCTGGTGA
  AGGATTATTA AGAGGCCACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss358809335	MGP_WTSI_3_89054214	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	C	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs217114479					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	C	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358809335	MGP_WTSI_3_89054214	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89157599 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13414	CpG island 13414	1147 bp proximal
Krtcap2	keratinocyte associated protein 2	563 bp downstream
Rr367466	regulatory region 367466	1003 bp upstream
Rr580001	regulatory region 580001	18 bp distal
Rr580002	regulatory region 580002	42 bp proximal
Rr580003	regulatory region 580003	259 bp proximal
Rr580004	regulatory region 580004	303 bp proximal
Rr580005	regulatory region 580005	1173 bp proximal