rs217076568 SNP Detail

Summary

• ID
  rs217076568
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:84563848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  TGTGTTCACG CGCACGGACT GCACGCGTCT ATTAATTTCA AGCCAAGCTT TCACACGTCT
  AAACCCATTG GTCTGCGCGC ACACGCGCGC GCTCACCTTT CATTTCTCCT TTCGGGGGTC
  GGGGTTGTGT GTGTCAGGAT ATCCAGGCTG CCTCTAAAAT CCATGAGCAC CCGCCTGATA
  R
  ACACACCTCC CTCAGTTACC CTAGAGGTAC ACCCCCCTCA AACAACCTGG GGTGTATCAA
  ATTGCAATAA GCGATTGTCT AGCGTTAGAC GAGGTTAAAT CCAGGTTAAT CTGCCTGCTA
  CCTACCTGGG TTTGGTCCTC AACGCGCCTG GCCCCAATTG TCACCAGAGT GGAGTTGTGA
  AGCGTCCAGT TGCATGGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369055477	MGP_WTSI_6_84536860	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217076568					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369055477	MGP_WTSI_6_84536860	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84563848 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17626	CpG island 17626			819 bp distal
Cpgi17627	CpG island 17627			28 bp distal
Cpgi17628	CpG island 17628			419 bp proximal
Cyp26b1	cytochrome P450, family 26, subfamily b, polypeptide 1			Intron
				mRNA-UTR
Rr633074	regulatory region 633074			804 bp proximal
Rr633075	regulatory region 633075			1762 bp proximal
Tssr61720	transcription start site region 61720			169 bp downstream
Tssr61721	transcription start site region 61721			778 bp downstream
Tssr61722	transcription start site region 61722			1071 bp downstream
Tssr61723	transcription start site region 61723			1125 bp downstream
Tssr61724	transcription start site region 61724			1430 bp downstream
Tssr61725	transcription start site region 61725			1734 bp downstream
Tssr61726	transcription start site region 61726			1765 bp downstream
Tssr61727	transcription start site region 61727			1785 bp downstream
Tssr61728	transcription start site region 61728			1829 bp downstream