rs217048163 SNP Detail

Summary

• ID
  rs217048163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:85430787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACGTTAA CGGCGCCTTC
  GCAGAGCTCA GGAAGCTGCT GCCCACCCAC CCGCCCGACC GGAAGCTGAG CAAGAACGAG
  GTGCTGCGCC TGGCCATGAA GTATATAGGC TTCCTGGTGC GGCTGCTGCG AGACCAAACG
  GCTGTGCTGA CCTCCGGCCC CAGCGCTCCC GGGTCCCGCA AGCCACCTGC GCGCAGGGGC
  R
  TGGAGGGCAG CGCACGCTTC GGGGCCGGGC ACAGAGTAGA GGCTGCACGC TCACAGCCCG
  TGCTTCCTGG GGACTGTGAT GGCGACCCCA ATGGGTCAGT GAGACCCATC AAGTTGGAGC
  AGACGTCCCT GAGTCCTGAG GTGCGGTGAC CCAAGGCAGA GGCGCCTCAC CTGCTGTTCA
  GTGAACTCCC TGTAAAAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375404545	MGP_WTSI_8_87228057	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217048163					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375404545	MGP_WTSI_8_87228057	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85430787 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lyl1	lymphoblastomic leukemia 1			Coding-NonSynonymous
Nfix	nuclear factor I/X			Intron
				Noncoding-Transcript-Variant
Rr368567	regulatory region 368567			359 bp upstream
Rr666586	regulatory region 666586			674 bp distal
Rr666587	regulatory region 666587			300 bp distal
Rr666588	regulatory region 666588			428 bp proximal
Tssr78439	transcription start site region 78439			743 bp downstream
Tssr82117	transcription start site region 82117			968 bp downstream
Tssr82118	transcription start site region 82118			1004 bp downstream
Tssr82119	transcription start site region 82119			1032 bp downstream
Tssr82120	transcription start site region 82120			1109 bp downstream
Tssr82121	transcription start site region 82121			1656 bp downstream
Tssr82122	transcription start site region 82122			1891 bp downstream