rs217030345 SNP Detail

Summary

• ID
  rs217030345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101014532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACAGCCTAA TATTAAGAGA ATAGAGAGAG
  AGCAAGACCA ATGGGGTCCT GCCTCTGGAG GACAATCAGG TAGGGATGTA AGACTTGGGA
  ACAGGAGCCA TGGACATAAG ACAAAGGCTG CCTGGCCACC TATAAGGAGC CAAAAATTCA
  Y
  AATTCAGACC ACTTCACACC TCCCCTAACA CCCCCTACCT CACCAGTCAT CTTTCTCTCC
  CCCTCCTCCC CCTCCTCCCA ACTCATGGAA CAACTCCGGT GCCATTTCTG AAGGAGCAGT
  GCACTTCACT CACCCACACT TTATGCTTTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320850925	CHEV_3_100911139	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217030345					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101014532 () rs orientation: forward

Symbol	Name	Function Class
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581960	regulatory region 581960	1232 bp distal
Rr581961	regulatory region 581961	1618 bp proximal
Tssr34770	transcription start site region 34770	860 bp upstream