rs216951514 SNP Detail

Summary

• ID
  rs216951514
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59784658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATAGCAAA CTCCAGGACA
  GTCAGGATTA CACAGAGAAA CCCCCGACTC AAAAGCAAAC AAACAAAAGA GTGAACGCCA
  CACCAAGATG CTACTGGAAG TTACCCTATG CTGCATAGCC TCACGCTAAA TCCAGACGTT
  TACCTTAAGA CGTAAAAGCG TTTGCCAGGC GGTGGTGGCG TGGGGGGGGG GGGGGGGGGG
  C
  AGAGCCAGGC ATAGCTCTAT GAATTCAAGG CCAACCTTCA AAGCGAGTTC CAGGACAGCC
  AGGGCTACCC AGAGAAACCC TATTTGCAAA CAAACAAACA AATAAACAGA AATGCAAAAG
  ACATAAATAT GTTTTAAGGT GTATTTGTTC TGTGATTATC AACCACTCTC CACAACTTGC
  ACCTGTGCTC TTAATTAATA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss361699344	MGP_WTSI_4_59797530	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs216951514					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361699344	MGP_WTSI_4_59797530	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59784658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14350	CpG island 14350	550 bp distal
Inip	INTS3 and NABP interacting protein	Intron
Rr376572	regulatory region 376572	327 bp upstream
Rr398295	regulatory region 398295	575 bp downstream
Rr593135	regulatory region 593135	861 bp distal
Rr593136	regulatory region 593136	302 bp distal
Rr593137	regulatory region 593137	622 bp distal
Rr593138	regulatory region 593138	1805 bp proximal
Tssr41950	transcription start site region 41950	782 bp upstream