rs216947393 SNP Detail

Summary

• ID
  rs216947393
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54823308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGA GCGCAATGGG AGTGGGCACC
  S
  GGTAGGCTGC GCTGGGCTCT GCGCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320773089	CHEV_3_54719809	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216947393					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54823308 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13182	CpG island 13182	within coordinates
Gm31358	predicted gene, 31358	132 bp upstream
Rr576863	regulatory region 576863	867 bp distal
Rr576864	regulatory region 576864	366 bp distal
Rr576865	regulatory region 576865	46 bp distal
Rr576866	regulatory region 576866	within coordinates
Rr576867	regulatory region 576867	within coordinates
Rr576868	regulatory region 576868	131 bp proximal
Sertm1	serine rich and transmembrane domain containing 1	mRNA-UTR
Tssr33288	transcription start site region 33288	60 bp upstream
Tssr33289	transcription start site region 33289	3 bp upstream
Tssr33290	transcription start site region 33290	98 bp downstream