rs216899536 SNP Detail

Summary

• ID
  rs216899536
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139338149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGAGGGT CTAGTCTCAG
  AGTCCCGTAA GTTCTACTTT GACGGGAGGC CACGGAGAAC TATTGGTTCC CAAAGTGGGG
  GACAGAATAG ACATGGCTCT GACTGTGACA CTGGAACCTG AGGAGACATG GAGGGATGGA
  TGTAGGTATC TTGGAAGCCT GACCTCGCCT GGCCCAGGCT TGGATAACCT GTGACCAAAA
  M
  GTCTTGGCTC TGTACTGCCG ACAGAGGTCC TTTCAGCCCC CAACCCAGGC CCCCTGCCAC
  AGAGGAGACC CCACATTCCA CATAACCTGT AGCTTTAAGC CTCCTGTTGG GCTGTCTCCT
  GCAAACTGCT CATTCCACAT TCTCGGGGTG GTGGGGTGGG TGGGGTGCCG GCACGCCCTG
  GGGAGGATGG CTATAAGGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321704305	CHEV_5_139828348	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216899536					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139338149 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	223 bp upstream
Rr623254	regulatory region 623254	987 bp distal
Rr623255	regulatory region 623255	486 bp distal
Rr623256	regulatory region 623256	within coordinates
Rr623257	regulatory region 623257	1302 bp proximal
Tssr49499	transcription start site region 49499	213 bp upstream
Tssr49500	transcription start site region 49500	1815 bp upstream
Tssr49501	transcription start site region 49501	1847 bp upstream