rs216899374 SNP Detail

Summary

• ID
  rs216899374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139223408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGGAAGC AAAAGAAAGG
  GATGGGTTTT GGAAGTAGGA GTCAAACCCC ATGACCTTCT TGTCTCCTTG AGAACAAAAG
  CACCTTCCTA GGGTGGTTTT AGTATCAAAT GGAAAGTTCT TGCCCCTTTG TTTTCATTGA
  AAGGCTTATG AATATTAATC GGAAGCAAAA TTATTCATTA ATGATTTTTA TGAGCCATAA
  R
  TGAATTATCG ACAACCAGTA GAGCTAAAGT AATATCACTT TGATAGCTAT GTCTGAAAAA
  CAATTAAAGA ACTTCAACAT CAAATTTAAA AAGAATGAAG AAAAAAGTAG AGAAAAAAAT
  TTAATTGGAT ATTTTATTTA TTTACATTTC AAATGTTATC CCCTTTCCTG GTTTCCCCTC
  TGCAAATCCC CTACTCCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320527004	CHEV_2_139207224	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216899374					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139223408 () rs orientation: forward

Symbol	Name	Function Class
Rr566017	regulatory region 566017	196 bp proximal
Rr566018	regulatory region 566018	358 bp proximal