rs216897829 SNP Detail

Summary

• ID
  rs216897829
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:8948107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGAACC AGAGCTGCGG
  TTTGAGGGGG AATGGTGGGC GCTTGGGGAA GCATGGACAT ATGGAGAGAA TGGGTTTGGG
  AAAAAAATTT AAACATAAGT AAAAAGATGC AAGGGCACAG AAAAGACTTA GGGGAGAGAA
  GGAGAGAGGG AAGAGCAAGA GAGAAAGATG AGAGAGGGAG AGATAGAACA CAGATAGAAA
  W
  TTTTATCCCC CTTTCTTGTT TTGCCCAGCC CTTGGAGAAG AGTCCAGAGT CCAAGGTCGC
  ACAGTCCTCT CTGCTGCCTC GCTCGCTGAA TGGCTGGCAG TCCGCAGCAT CCCCGCCTCT
  GGCCACCGCA GCCACAGGTT TACAGTTCCC GGCAGCAGCG CCCCTCCCGA AGCCAACTGG
  AGCACCCTAC TCTCTCCAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367333486	MGP_WTSI_6_8898107	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216897829					SNP	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367333486	MGP_WTSI_6_8898107	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8948107 () rs orientation: forward

Symbol	Name	Function Class
Nxph1	neurexophilin 1	324 bp upstream
Rr626455	regulatory region 626455	17 bp proximal
Rr626456	regulatory region 626456	522 bp proximal
Rr626457	regulatory region 626457	1079 bp proximal
Tssr54925	transcription start site region 54925	320 bp upstream
Tssr54926	transcription start site region 54926	463 bp upstream
Tssr54927	transcription start site region 54927	501 bp upstream
Tssr54928	transcription start site region 54928	808 bp upstream
Tssr54929	transcription start site region 54929	844 bp upstream
Tssr54930	transcription start site region 54930	945 bp upstream
Tssr54931	transcription start site region 54931	1563 bp upstream
Tssr54932	transcription start site region 54932	1705 bp upstream