rs216885562 SNP Detail

Summary

• ID
  rs216885562
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102027651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAGTCCG AAAACCAAAA
  GGAAGGGCTA ACTAATGATT CCAATGCAAT GTAAAGTCAA AGAACACTTG CCCCGATTGG
  TTGAGGTTTA GAATTGATAG CAAGATAGTG ATAATGATCA TACCTTAAGT GCTTATTACG
  GGCAAGGACC AATCCTATCC TCTCAAAGGC CCATAACGGG GGGGGGGGGT GGGGGGGTGG
  K
  GGGGGGGCAG TATTCTCAGT GTGTAGAGGG AATAATCAAA GTAGGGAGTG ACAGATGCAT
  TCAACTGAAG TCACATAGTC AGCGACTGGT AAGACTGGAT GTACCTGAGT CCTGACTGAC
  ATGAAAGACT ATTCTGGATA GCTGTGCTCA GAGACGGAAG CTTCAGGTAG CGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320854483	CHEV_3_101924258	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216885562					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102027651 () rs orientation: forward

Symbol	Name	Function Class
Casq2	calsequestrin 2	Intron
Rr582181	regulatory region 582181	742 bp proximal
Rr582182	regulatory region 582182	747 bp proximal
Rr582183	regulatory region 582183	1826 bp proximal
Rr582184	regulatory region 582184	1844 bp proximal
Rr582185	regulatory region 582185	1909 bp proximal