rs216884779 SNP Detail

Summary

• ID
  rs216884779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116114654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAAATGCTG ATGGTAAGAA TGTCAGCACT
  CATGAAACTC AGTTATCTCA AAACACTTTT GAATGCTCTG TCATTTTCTT CTCTAAAATA
  GTAATTCGTT AGTAGCTGTT AATTAGTTTA TGAAAAGAGT CAAAATTACA TTTATATTCC
  Y
  GGCTTTACAT ATACAAGAAG CTAGCTATAC TCTGATAAGA CAGGAATTTG GCTTTTCTTT
  TGTTCATTAT CTTTAAAGTG TCACATTCTT ACAGTAAATG GGAAAAGGAA AAGAGCAAAA
  TGACATGACA GAAGAGAGAT GAAATATGGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321917237	CHEV_6_116087711	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216884779					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116114654 () rs orientation: forward

Symbol	Name	Function Class
Gm66805	predicted gene, 66805	within coordinates
Rr399854	regulatory region 399854	1613 bp upstream
Rr637158	regulatory region 637158	1217 bp distal
Rr637159	regulatory region 637159	1548 bp distal
Rr637160	regulatory region 637160	1258 bp distal
Rr637161	regulatory region 637161	1683 bp proximal
Tmcc1	transmembrane and coiled coil domains 1	Intron
Tssr58351	transcription start site region 58351	236 bp downstream