rs216822010 SNP Detail

Summary

• ID
  rs216822010
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:167380539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTGGGGG GAGGTGAGAA
  TCGGGCTCTG CGGGCGCGAC AGGTGGATCT GGAGCTCCGG GTCTTGGCAG TTGGGATCCA
  CCGAGGGTGT CTTTGACCCG GGACGGGGAG GCTCCGGGAG TTGAAGACTC GAAGGCGGGG
  GTAGCTTTGC GGAGTCCGGG CGGGGGAGGG GAGGGGCGGG CGGGAAGCCC CCCCACCTGG
  Y
  GCCCCGAGAA TCCGCTCAGC TGACTCCCTG CTGTCTCTTC TCTTCCCGCA GAGTTCACCT
  TCCAGCAGCC CTACGACCAG GCCCACCTGC TGGCCGCCAT CCCTCCGCCC GAGGTCCTCA
  ACCCCGCCGC TTCGCTGCCC ACCCTCATCT GGGACTCTCT CCTGGTACCC CAAGTGCGGC
  CGGTTGCCTG GGCCACCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356507202	MGP_WTSI_2_167364119	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216822010					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356507202	MGP_WTSI_2_167364119	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167380539 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12746	CpG island 12746	within coordinates
Gm75792	predicted gene, 75792	within coordinates
Rr397509	regulatory region 397509	409 bp downstream
Rr570626	regulatory region 570626	1305 bp distal
Rr570627	regulatory region 570627	414 bp distal
Rr570628	regulatory region 570628	637 bp distal
Rr570629	regulatory region 570629	589 bp proximal
Snai1	snail family zinc finger 1	Intron
Tssr21819	transcription start site region 21819	409 bp downstream
Tssr21820	transcription start site region 21820	1163 bp upstream