rs216821177 SNP Detail

Summary

• ID
  rs216821177
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141979982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGCATATC TGTGTGCTAG CCTTTGAATA
  TTCCCACTTT TTGTATTGTA ATATATCATG AAACATGTTT ATAAAATTAC AGTTCTCATA
  ATATTTTTAA ATAGCACATC AAAATACTCT GGAATGTTCT GCCCCATTCT ATTTCATTTG
  R
  GGGCATGCTG GCTACATACC AAGttccaac acaaaaaaat agtttttgtt tttgaagaaa
  aggaagtact tactattgac tctatcatca aacaatgtat acatgtgcca aattatcaga
  atgtacccca taaagattta caaatatgtc                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320999841	CHEV_3_141937185	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216821177					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141979982 () rs orientation: forward

Symbol	Name	Function Class
Pdlim5	PDZ and LIM domain 5	Intron
Rr398078	regulatory region 398078	880 bp upstream
Rr586404	regulatory region 586404	279 bp proximal
Rr586405	regulatory region 586405	883 bp proximal
Rr586406	regulatory region 586406	1011 bp proximal