rs216798977 SNP Detail

Summary

• ID
  rs216798977
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:96980122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATCCAGA GACAGAGTTA
  CCTTGAGGCC AGTCCCTGTC CCTCCTCAGC CTGGGCCTGG ACTCTAATAT CCATGACCCT
  TGAACATCTG CGAGATACCT CACAGAGGCC AAAGAAGACT CAGCCATTCC AGAAATGGCC
  CATACAAACA AGGCAGAAAA AACAATAAGA AACCCCAGCT CCTGGTTAGC CCCTGGATCT
  R
  CTGTTCCCAG ATCTCCTCAA AGGGGAGGAG GGAGGGTCTG CAGGTCCCTG CCCTGCGTTG
  GGGAGGAGGG GGTTCATCTG CTGTCCTCTC AGCCCCTCAC ATTCATGCCC CCACACCCTG
  ACTCCTATGG ACGCCAGGGT TCACTCGGGT CTCTTGGCAG CAGAATGTGT TTTAACTCAG
  TGTCTTACCA AGGCAACCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372444446	MGP_WTSI_7_104479425	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216798977					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372444446	MGP_WTSI_7_104479425	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:96980122 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kctd21	potassium channel tetramerisation domain containing 21			1412 bp upstream
Rr400445	regulatory region 400445			1176 bp upstream
Rr651401	regulatory region 651401			1375 bp distal
Rr651402	regulatory region 651402			within coordinates
Rr651403	regulatory region 651403			1095 bp proximal
Rr651404	regulatory region 651404			1397 bp proximal
Rr651405	regulatory region 651405			1423 bp proximal
Tssr67964	transcription start site region 67964			1396 bp upstream
Tssr67965	transcription start site region 67965			1723 bp upstream
Tssr73573	transcription start site region 73573			1102 bp downstream
Tssr73574	transcription start site region 73574			1188 bp downstream
Tssr73575	transcription start site region 73575			1201 bp downstream
Usp35	ubiquitin specific peptidase 35			Intron
				Noncoding-Transcript-Variant