rs216777440 SNP Detail

Summary

• ID
  rs216777440
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:31121655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTTCTCA CACCGCTGGA
  AAGTGAGGTG GAGTGTGAAC AATGGTTTTT GACACTGACC CATTAAGTCC CACCCAATAT
  ATAAAACTCG GTCTCCCCAC CCTTCTCTTC TTATCCCCGC TCAATGTAGC TGTTTCCCAG
  TGACATCTTA TCAGGGATCA CAGATACAGC CCTACCAACT GTGTGGAAGC TGAAAGAATC
  K
  AAAAGTTCGT GTGTATAAAC ATTAACTGTT TCTACTTAAG ACTTATCTTT TTTTCCCACC
  TCAGTCAAAA AGTTTCAAGC AAGATGAATA CAAAGATTGT TTTAAGATGT GCCATCCGGA
  AGATTTTTTT CCTCATTAGA TCTTTTTACC AATAGAAATA TTTACACATT CTGTAGAAAT
  GAATTCACTC TGAGCCGGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322889592	CHEV_9_31017944	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216777440					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31121655 () rs orientation: forward

Symbol	Name	Function Class
Aplp2	amyloid beta precursor-like protein 2	Intron
Gm69111	predicted gene, 69111	1665 bp upstream
Rr401293	regulatory region 401293	1363 bp upstream
Rr675968	regulatory region 675968	within coordinates
Rr675969	regulatory region 675969	552 bp proximal
Rr675970	regulatory region 675970	1418 bp proximal
Rr675971	regulatory region 675971	1632 bp proximal
Rr675972	regulatory region 675972	1676 bp proximal
Tssr84218	transcription start site region 84218	975 bp upstream
Tssr88644	transcription start site region 88644	745 bp upstream
Tssr88645	transcription start site region 88645	1446 bp downstream