rs216768699 SNP Detail

Summary

• ID
  rs216768699
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62736456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTGGTT TGCAAAGAGA
  GTTCACATTG TCTCAAAAAT CAGAACAAAA CACAACAAAA AGAAAAGAGA AGAAAGAAAA
  AGAGAGAGGG AGTGAGAGAG AGAGAAAGTA AGCAGGCTGA GCAAGTCACA AGGAACAAGC
  TGTTGCGGTA ATTTCTAACC CCGATAAGCC TGTATAAAAG ACATATAACC CAGTTATATT
  K
  ATAAGCTATA TGCCTAGATT GGGCAGATCT ATCACTATAC TAACTTATTC TCTAGTTATG
  AGACCCCTTG CTGCTTGCAG CTTCTCCGGG CCATGTGCTT CTGCTCCATA TTGGCTTCCA
  CCTCCTCCTC CTCTGTCTTC TCTCCTCCTC CTTCCTCTGA AACCTCCTGT CCCACCTTTC
  CCTTGCACTG CCCAATCATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383617041	MGP_WTSI_11_62659132	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	T	G	T	T	G	G	G	G	T	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216768699					SNP	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	T	G	T	T	G	G	G	G	T	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383617041	MGP_WTSI_11_62659132	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62736456 () rs orientation: forward

Symbol	Name	Function Class
Fbxw10	F-box and WD-40 domain protein 10	1439 bp upstream
Rr386163	regulatory region 386163	within coordinates
Rr448938	regulatory region 448938	1296 bp proximal
Tssr102067	transcription start site region 102067	1432 bp upstream
Tssr102068	transcription start site region 102068	1460 bp upstream
Tssr102069	transcription start site region 102069	1481 bp upstream