rs216754817 SNP Detail

Summary

• ID
  rs216754817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53103829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCACACA GGTTCCAGAT
  CTCTGTAATT ATACCCAGCT CTTTTCATTA GCCTGGAGAA TTGTAACAAC ACACTTCAGC
  TTTGTAAAAA ATCTCCGTGA TAGTCGATCG GACACTATCT TGCTGCTTAT TTATGAGAAT
  GTAAAGTGGT ACATAGCAGG TGATAAATTT TCCGTACCCA CTTTGCAGAG CGCCTTCCTT
  R
  CCTGCCTTGT GCTTCCCACT CATTCAATGT GTGGGGGGTC TCACTGTCCT CATCAGTGTG
  AGACCCAAGT CACAGTAGCT TCCTGATTAC TTAATTAATT TTTCACCCTC GGTGTTTATT
  GTTTTTTTAC AATTTTCATT TTATTATGCT TTCTTAAAAT GTTATTCTTC CTGGCCATGC
  CTGTACAGCA GGACTTGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320766892	CHEV_3_53000330	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216754817					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53103829 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576654	regulatory region 576654			290 bp distal