rs216729463 SNP Detail

Summary

• ID
  rs216729463
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135898009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTACAAGG CAAGAAAGCC AAGTCTTGCT
  TGAGGCAAAC CACAATAAAC GTTCAAAGAG TAAAGGCCTT CAGGGTGAGA GAGGGCAAAC
  AGGcagggaa ggcttccggg aggaggagaa gtttaagctg ggacttaagg gaccagtgaa
  M
  tagcAGACTA TTTtttgttt gtttgtttat ttgtttAttg gtttttcaag acagtataac
  cctggctgtc ctggaactca ctcagtagac caggctgtct ttgaactcag aaatctacct
  gcctctgcct ctcacatgct ggcattaaag                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321354356	CHEV_4_135726613	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216729463					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135898009 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15100	CpG island 15100	1255 bp proximal
E2f2	E2F transcription factor 2	1696 bp upstream
Rr367754	regulatory region 367754	1370 bp upstream
Rr602302	regulatory region 602302	1206 bp proximal
Tssr39670	transcription start site region 39670	1568 bp upstream
Tssr39671	transcription start site region 39671	1669 bp upstream
Tssr39672	transcription start site region 39672	1698 bp upstream
Tssr39673	transcription start site region 39673	1730 bp upstream
Tssr39674	transcription start site region 39674	1860 bp upstream
Tssr39675	transcription start site region 39675	1968 bp upstream
Tssr44029	transcription start site region 44029	1620 bp downstream
Tssr44030	transcription start site region 44030	1903 bp downstream