rs216689874 SNP Detail

Summary

• ID
  rs216689874
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:142844790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCTCAGA TATTTGGACT
  TGGCTCCCCC CTCCCCCCAA TAGCTCAGCA CTGGGCATGA GAGCAGGCTT GAAGAGTTGG
  TGAGCTCTGT ACTTCTGCTC AAAATGAGGT CCACGGATGG GCAGCACAGT AACCATGTAG
  GTGGGACCTA CAGACGCTCA GAACCAACAG AAATCTTAGA AGAAACTGAC GGGGGTGGGG
  K
  TGGGGGTGAT ATGCTGAAGC TGCGAGGACC TGCAGCTGAG GACAGGTAGG TAGAGCCAGA
  TGTACAAATA TTTTCTGATC TGGGTTGGGG CTGGTGTCCA GCAGCTGTAA ACAAGTCCCT
  CTAATAATGC AGGAGTGGGG AAGAAAAGGC AGGTGGTCCC AGAGGGCCAG AAAAACGCTG
  GCCCTCCTGG GTGGCCCGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321402611	CHEV_4_142708123	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216689874					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142844790 () rs orientation: forward

Symbol	Name	Function Class
Prdm2	PR domain containing 2, with ZNF domain	Intron
Rr604158	regulatory region 604158	547 bp proximal
Rr604159	regulatory region 604159	1813 bp proximal