rs216677515 SNP Detail

Summary

• ID
  rs216677515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101140899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCCAGGC CTTACCTCCC
  CAGATTTTTA TCTCCTGGAG TCTACAGAAA CTTTCTTAGA ACTTGTAAGG AAGAAGAGTT
  CCTCCTTTGG TTTCTCAGAT TCTTTTACAC ATCTTAGAGC TGTCTTTTAT ACACAGACTC
  TGGCCAGTGG ATATGATCCC CATCCTAGAC TGTGAGGGAA TACAACATGG CCCACGTTTC
  Y
  ATCTGTTTGC AGCCATTGGT GGATGCGTGG GTAGACAAAA TGATCTATAC AAGGCAGGGA
  GCAACACAAC CACTTGGGGG AACTGAGTCC TAGAACTCAC ATTGCTAGGT GAGGCAACCT
  TTGTTCTCCA GACTTGCCTA AGCTTGAACC TGAACAGACA GATTAAGGAC ATGACGGTCA
  CAGAACTGTT AGCTTGTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321229201	CHEV_4_100956307	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216677515					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101140899 () rs orientation: forward

Symbol	Name	Function Class
Gm12801	predicted gene 12801	506 bp upstream
Gm69021	predicted gene, 69021	within coordinates
Rr376921	regulatory region 376921	within coordinates
Rr596107	regulatory region 596107	246 bp proximal
Rr596108	regulatory region 596108	417 bp proximal