rs216648004 SNP Detail

Summary

• ID
  rs216648004
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15184922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGTCTT TCTTCTCTGC
  TAGTTGATTC CTGTTTTTGT GAAGCAGCTA AGAAAACATC TGTGGCAGGC AGAAAAAATT
  GACAAAGGAT TGACAAACAC CATTAGCTGA AAATTTTCCA TTTCATTGCA ACTATGCATT
  GTTTACTTTA CTGTAAATAT CTTAATACAT CATCCTCTGA ATATGCTGGC AGAGAGGCTG
  S
  AGAACCGTGA TTTCAATTAA GGTTAGTAAT TGATGGTATC TAGCGTTCAA AGACTGGGGC
  TTGATTAACA GCTGCTTGGA CAAATTGTCA TTGTGAAGTG GTTTTGATGT GCATTGAAGA
  TTATTTCTTT CTGGCTTATC TGATGTTGTG GCTGTGAAAT GCTTGTCTTG GATTTGCTTA
  TTTTTGTAAA CTACTTCCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367474001	MGP_WTSI_6_15134923	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216648004					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367474001	MGP_WTSI_6_15134923	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15184922 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr626646	regulatory region 626646			1615 bp distal
Rr626647	regulatory region 626647			266 bp distal
Rr626648	regulatory region 626648			93 bp proximal
Rr626649	regulatory region 626649			594 bp proximal
Rr626650	regulatory region 626650			1634 bp proximal
Tssr54974	transcription start site region 54974			342 bp downstream
Tssr54975	transcription start site region 54975			261 bp downstream
Tssr54976	transcription start site region 54976			178 bp downstream
Tssr54977	transcription start site region 54977			156 bp downstream
Tssr54978	transcription start site region 54978			292 bp upstream
Tssr54979	transcription start site region 54979			447 bp upstream
Tssr54980	transcription start site region 54980			516 bp upstream
Tssr54981	transcription start site region 54981			533 bp upstream
Tssr54982	transcription start site region 54982			659 bp upstream
Tssr54983	transcription start site region 54983			684 bp upstream
Tssr54984	transcription start site region 54984			716 bp upstream
Tssr54985	transcription start site region 54985			732 bp upstream
Tssr54986	transcription start site region 54986			935 bp upstream
Tssr54987	transcription start site region 54987			1881 bp upstream
Tssr54988	transcription start site region 54988			1928 bp upstream
Tssr54989	transcription start site region 54989			1979 bp upstream