rs216621691 SNP Detail

Summary

• ID
  rs216621691
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88740859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTTCTTT TCCTTTGTAG
  GGTTTGGGTT TTGATTCCAA GATCAGGCCA GCTGTGACCA AAAGAGCGCT TTTGGTTTCT
  TAATGTGACC CCCCCCCCTC CCCAATGACA GAGAAGAGAA GTTGTGATTT TTCAAAAAGA
  CAGTCTCTCT CAACCAGGCT GCTCTGCAAC TCATTTGTTT AGCCAGCCTA TACTGGACTG
  R
  AAATCTCCTA TTGATAGGAT TACAATCTCC TATTGAGCCA CCACAGCCTG TCAAGAGTAA
  TTTTAATTAC ATTTATTGAC AGGGTCTTGG GTAATACAGA CTGACCTTGA ACTTACTGTG
  TAGTCCAGGC TGGTCTTGAA CTCCTTTCAA CACCTGCCAA ATGCTAGTGT TACAGTCATA
  GACCACTCTG CCTAAAAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358802528	MGP_WTSI_3_88637474	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216621691					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358802528	MGP_WTSI_3_88637474	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88740859 () rs orientation: forward

Symbol	Name	Function Class
1500004A13Rik	RIKEN cDNA 1500004A13 gene	1005 bp upstream
Gm64348	predicted gene, 64348	63 bp downstream
Gon4l	gon-4 like	1672 bp upstream
Rr375322	regulatory region 375322	1460 bp downstream
Rr375323	regulatory region 375323	1402 bp upstream
Rr397779	regulatory region 397779	748 bp downstream
Rr579902	regulatory region 579902	1077 bp distal
Rr579903	regulatory region 579903	1958 bp distal
Rr579904	regulatory region 579904	413 bp distal
Rr579905	regulatory region 579905	1024 bp proximal
Rr579906	regulatory region 579906	1163 bp proximal
Rr579907	regulatory region 579907	1589 bp proximal
Rr579908	regulatory region 579908	1605 bp proximal
Rr579909	regulatory region 579909	1690 bp proximal
Tssr34067	transcription start site region 34067	981 bp upstream